Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs74117850 chr10:1165777 T/C 1.5E-13 133 42.1 66.9 17.1 KM Plot
TGCT rs74120451 chr10:1126866 T/C 2.26E-13 132 42.03 66.9 17.1 KM Plot
TGCT rs74328919 chr9:37056887 G/T 3.49E-5 130 35.37 65.05 45.1 KM Plot
TGCT rs74330361 chr20:44788950 A/G 0.000157 132 37.62 70.6 33.45 KM Plot
TGCT rs74415001 chr2:29524441 A/G 0 133 45.1 24.23 0.57 KM Plot
TGCT rs74419707 chr2:29493666 A/G 0 134 42.27 25.02 0.57 KM Plot
TGCT rs74485380 chr14:70986690 TAA/T 1.3E-5 134 38.2 66.9 21.43 KM Plot
TGCT rs74624657 chr2:29511336 C/G 0 134 43.68 24.23 0.57 KM Plot
TGCT rs74653801 chr8:116916017 C/G 8.4E-7 133 46.3 28.7 18.83 KM Plot
TGCT rs74822228 chr2:29531307 G/A 6.16E-8 131 45.1 23.37 13.18 KM Plot
TGCT rs74907988 chr5:74599438 T/C 1.62E-5 129 45.47 28.67 9.27 KM Plot
TGCT rs7502936 chr17:39338350 T/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs75041892 chr5:74497558 C/T 4.13E-14 128 45.1 32.37 4.92 KM Plot
TGCT rs75204333 chr16:67574408 T/C 0 132 45.83 24.1 0.57 KM Plot
TGCT rs7524593 chr1:181136708 A/G 1.23E-6 134 22.4 28.53 45.47 KM Plot